PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G24700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 230aa    MW: 24853.8 Da    PI: 9.8812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G24700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.7e-061371655
                  HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  OB06G24700.1  1 MNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 37
                  8*************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-6148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.62136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-9162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.16E-7141No hitNo description
PROSITE profilePS516719.032164230IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNENLAVLRS LMPCFYVKRG DQASIIGGVV DYIKELQQVL HSLEAKKKRK VYTEQVLSPR  60
PSPAASCCSP RPPLSPRLPP QMLKSTPPLR RRPRLLRSRQ APTTSPAMTP THEPPAAASA  120
YGQLPSLDAI ANELSAYGNR QALAPAAAGL LPDVKVEFAG ANLVLKTVSQ RSPGQAVKII  180
AALEGRSLEI LHAKISTVDD TAVNSFTVKI GIECQLSAEE LVQEIQQTFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550KKKRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874824e-91AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence.
GenBankAP0054704e-91AP005470.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0043B22.
GenBankAP0149624e-91AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126144e-91CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693600.11e-128PREDICTED: LOW QUALITY PROTEIN: transcription factor SPEECHLESS-like
SwissprotQ700C73e-59SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLJ3MEM61e-167J3MEM6_ORYBR; Uncharacterized protein
STRINGOB06G24700.11e-166(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-39bHLH family protein